rs48996770 SNP Detail

Summary

• ID
  rs48996770
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr6:86975567 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCAGGAGTG TGTTTTTATA
  TCTGGACGGC TCTGACCATT CCTAGTGGTT TTCATGTCCT TTATTTTTAC TGCCTTAGAA
  TAAACCCTGA CTCCATGAGG CATCCACTGA GGAAAGAGTT GCAGCAAACC CAGGTGTGCA
  CTCATGGCTT CTCACAGACA CTGCTTCCAC TTGCCTGCGG AAGTGTGGAG AGCTGTGTGT
  Y
  GCGCTGGATT AGTGATGGAA GAAAGGCTAG AAGCTAGGCA CAGTAGCGTA CCGCTGCAAA
  CAGGGCACTC GGGTGGTACA GAAAGAAGGA ATTCCAGGGC AGCCTAGACT GCACGACACA
  CTGTCCCAAA AGAGAAAATC CATCCAGGGC TAAAGCCTGA ATGCCAGGCT GCACTTGCAA
  TCACTTAGTT GTGATAGCCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss133361182	ENSMUSSNP1214062	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs48996770					SNP	T	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:86975567 () rs orientation: forward

Symbol	Name	Function Class
Aak1	AP2 associated kinase 1	mRNA-UTR
Rr633570	regulatory region 633570	1346 bp distal