rs48996843 SNP Detail

Summary

• ID
  rs48996843
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr9:50673177 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ACATCCTGTT TAAGGAGAAG
  TTACAGGCAC AGATGCTTCT GGCAATAGTC CTCATACATT AGACAGGAAA GGGGAAATGA
  TGCCTGTTAT GTTTTATGAA AAAGAGCCAT GTTTGATAGA GCAGGTATGG TGAGGTGGAA
  GGGTGTGCCT TTGCGGGCCC ATGCTGAGAC ATCCTTCCCC ACTAAGGTAC CAGCCACACA
  M
  CGGATATAGT ATGGAATAGA GTTACAGGGG TGGGGGGGAA CAGGGAAAGA AAGACAGAGG
  GTAAGAAAGC AAGAGGGTAA GAGAGTAAGA GTGAGTAGGG GCAAACAGCC CCTTTTATAG
  TAAGCCAGGC ATACCTGGCT GTTGCCAGGT AACTGTGGGG TGGAGCCTAG AAGGAATGCT
  AACAATGCTT ACCTGTATCA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136481032	ENSMUSSNP1675767	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48996843					SNP	C	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:50673177 () rs orientation: forward

Symbol	Name	Function Class
Cfap68	cilia and flagella associated protein 68	mRNA-UTR
Gm67659	predicted gene, 67659	within coordinates
Rr678731	regulatory region 678731	1562 bp proximal
Rr678732	regulatory region 678732	1651 bp proximal