rs48996861 SNP Detail

Summary

• ID
  rs48996861
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:147181705 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    TTTGATTAT TTTTAATTGA CTTAAACAAT
  CTACCACTTG TAAAAAAAAG AAATGGGTAA ACGAAACATT TTGGAACACT GAGATGATAC
  ACCTTAAACT ACAGCTTAAA AGCATTTTGT TTGTTGATGT TTGATGTTTG CTTTAATGta
  Y
  ttaatgtata atataatata tatttttaCT ACTATTCTTG AGAAAATTTC TTAGGAGCCT
  AGCAGCCTAG aaaaaatata gattaatata agttaataat aaaaataatt ataagataat
  ttcaatataa attaatatat tgaataaata                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	LG/J	MSM/Ms	SM/J
ss145669218	ENSMUSSNP6208263	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		C
ss320022104	CHEV_1_149153097	CHEVERUD	SCREENING_POP	f	SNP		T		C
SNP Consensus Information
SNP					Consensus Type	A/J	LG/J	MSM/Ms	SM/J
rs48996861					SNP	T	T	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:147181705 () rs orientation: forward

Symbol	Name	Function Class
Rr420066	regulatory region 420066	326 bp distal