rs48997665 SNP Detail

Summary

• ID
  rs48997665
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr1:164037016 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TGCTTTCCCA AAGTGCAGCA
  CAGCTAGTCA GTGTCCACAC TGACATTCAA GTTCAGATGT GCTTTGCTCA ACTGTGGGCT
  GTACCTCGCC ACTTAATGAA TTTACTAAGA CCTTGGGTAT TCCCAATGCT AAAGAAAGCT
  GATTATAGCT TGAGTTACGG TAAGGTGTGA CTCACTAACA AGGATGGTTC TGTTTACTCG
  Y
  TTGACTGTGT TGCAGGTGGA CATGCAGAAG GAAGTTGTAG TCACCGGGAT ACAAACCCAA
  GGTGCTAAAC ACTACCTAAA GTCCTGCTTT ACCACGGAGT TCCAAGTGGC TTACAGCTCT
  GACCAAACCA ACTGGCAGAT CTTCAGAGGG AAGAGCGGGA AGAGCGTGAT GGTTTGAGCA
  CTCATTTCTA GCTAAATCTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60338259	NES15832762	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48997665					SNP	C	C	C	C	C	C	T	C	C	C	C	C	C	C	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60338259	NES15832762	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:164037016 () rs orientation: forward

Symbol	Name	Function Class
F5	coagulation factor V	Intron
Rr422161	regulatory region 422161	677 bp distal
Rr422162	regulatory region 422162	1535 bp proximal