rs48997880 SNP Detail

Summary

• ID
  rs48997880
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:34583397 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTGCCTTCCC TTCAATCTAT
  GGTAAAACCG TGCATTCAGA GGTATCTTTG ACAGAGAGAG GCCTTTAACT AGATTGTTTC
  CCATAAGTAG GAATGGGTCT TGAACCTGAG GTTTAGTCAC CTGAAGACAT CTTTTCCTGA
  GGACTTTCAA TCTTCTCCCC AACTCACACA TAATGAAGGA CATGTATGTG TTTTGCTCTC
  R
  TTTTCTTTAT ATACCCAGGA TTGCACTGAG CAACACCAAA AGGGCACCTG GAGACATAAT
  TATCCAGGGT CTTTGATGAA CTTTGCTGTA GATTTGCTAA GTGAATCTTG GCCTCTTTGG
  TTGATATTTG TAAACCAGAT TTACTTACAG GTCAGCCAGG GCAGTGTCAG GACTTTCCTT
  GTGAGTTTAT GGTGAGATTC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
ss63254886	NES17488617	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G	G	G	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ
rs48997880					SNP	G	G	G	G	G	G	A	G	G	G	G	G	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63254886	NES17488617	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:34583397 () rs orientation: forward

Symbol	Name	Function Class
Ifit3b	interferon-induced protein with tetratricopeptide repeats 3B	1973 bp upstream
Rr405932	regulatory region 405932	1515 bp upstream
Rr546756	regulatory region 546756	1483 bp proximal
Rr546757	regulatory region 546757	1984 bp proximal
Tssr156136	transcription start site region 156136	1526 bp upstream
Tssr156137	transcription start site region 156137	1930 bp upstream