rs48997914 SNP Detail

Summary

• ID
  rs48997914
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:164789175 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTGGAGCTCA CCAGTGAGAA
  GCATCTAAGA GAAGCTTGGG AGAACACCCA GCTCTCTCTC TCCGGCTCAC AGGTCTGTTC
  GTTGGGAAGC ACATGAAGGT CTGGGCACAC AGGAGGCTTA GTCAGAACAG CTTGCTGAAG
  ACAGATCAAG GCCCTGCTCC ACCATGGTGG CAGGCGAGGA GGATGGAAGG CCGGGGGCTG
  M
  CGGCTGTTGG CAAGACTGTG CCAAAGCTTT CCTGAGTGGA GCAGGGCAGG GCTGGAGGAG
  GGGAAGGGTC CATGACGATC TCACAGCTCG GGAGAGGAAG GTGTTTGCCC CATCCAGGTC
  ACCCCAAGGC TTAGAGCCAA GACCCCAGTC TCCTAATTTC CAATCACAAA CCTGACACCA
  TCAACTGAGG TCTCGTGAAC                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss148233506	ENSMUSSNP4037130	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs48997914					SNP	C	C	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:164789175 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12679	CpG island 12679	1833 bp proximal
D2Dcr116	DNA Segment, Chr 2, Derry C. Roopenian 116	805 bp proximal
D2Mit1000	DNA segment, Chr 2, Massachusetts Institute of Technology 1000	807 bp proximal
Mmp9	matrix metallopeptidase 9	within coordinates
Tssr21688	transcription start site region 21688	180 bp downstream
Tssr21689	transcription start site region 21689	486 bp upstream
Tssr21690	transcription start site region 21690	976 bp upstream