rs48998381 SNP Detail

Summary

• ID
  rs48998381
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:59091250 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AGACA TCAAAGAAGC CACACTGTCC
  A
  TATGAAGAAG TTCTTCCTCC TCCGC                                      
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss132229216	ENSMUSSNP6031997	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs48998381					SNP	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:59091250 () rs orientation: forward

Symbol	Name	Function Class
2610507I01Rik	RIKEN cDNA 2610507I01 gene	within coordinates
Cpgi2954	CpG island 2954	1602 bp proximal
Rr402602	regulatory region 402602	1945 bp upstream
Rr448112	regulatory region 448112	1162 bp proximal
Tssr108206	transcription start site region 108206	1258 bp downstream
Tssr108207	transcription start site region 108207	1288 bp downstream
Tssr108208	transcription start site region 108208	1717 bp downstream
Tssr108209	transcription start site region 108209	1745 bp downstream
Tssr108210	transcription start site region 108210	1952 bp downstream