rs48998609 SNP Detail

Summary

• ID
  rs48998609
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:82514427 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAAGCAAG CCAGAAAGCA
  ACTTCAGCTT CTGCTCCAGC CTTGACTTCT GTCTTGCATC CCACAACGAT GGACAGTGCT
  GAGGAAGTGT AAGTCAAATA AAACCTTTCC TCTCCAAGTT GCTTTTGGTC CGCGTTTTTA
  CCATAGCAAC CGAGGGAATA AACTAGGACA CCTTATGACC TCCTTGAGGC CACCTAAGGA
  Y
  TTAGCAGAAG GGCAAATGCC TGGAGGGCAG TGAGGAGGGA GGTGGCCCTG GGAAGTCACA
  CTCCTGATTT TCTCTGCAGC ACCCATGAGA ACCACACTTC TGTTGCCAGG GAAGGGATGA
  GCCAGGATTC AAGTTCGCAG AGCTGTGACT CCCTCTGCCT GCTGTCTGGT GGTACTAAGA
  GGCAGCCTGG CTATGTGTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61656701	NES17599866	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48998609					SNP	C	C	C	C	C	C	C	C	C	C	C	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61656701	NES17599866	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:82514427 () rs orientation: forward

Symbol	Name	Function Class
Gm61154	predicted gene, 61154	within coordinates
Rr387523	regulatory region 387523	575 bp downstream
Rr469294	regulatory region 469294	within coordinates
Rr469295	regulatory region 469295	430 bp proximal
Rr469296	regulatory region 469296	817 bp proximal
Rr469297	regulatory region 469297	1899 bp proximal