rs48999585 SNP Detail

Summary

• ID
  rs48999585
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr19:32187294 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGCATCTCTG TCGGTTTGTA
  TATTTCCTTA AAAAAAAAAA TCAAAAGATA TTTTCCAGCC CACCACCTTC CCAAGCCTCG
  GCAAGGCAAG AAATTTCCTT GTAACCTGGA GGCTGAGAGA TCTAGCTCCA TGAGAGGCCC
  TAGATCCAAC AGCCACCACC AAGAAATAAA ATAAAAATCA ATGTGTACAA TACAAATAAA
  W
  TTGCTGCCCA GAGTTTTTAA AGACGCTTAC CAACTTTGTT TTTACATAAA TTTAAAACCG
  ACATGACCAA GAATTTGAGA TTTAGCTTAA CTGGCGGGAT GCATCACAGT GGAGACCTTG
  GGATGTATCC CCAGGAACAC ACAAAGTGAC TCAAAGAGGC TACAAGTAGA ATGAAAATTT
  GCCCCATTCA TGAAAACCGC                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss63246552	NES17481709	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs48999585					SNP	T	T	T	T	T	T	T	T	T	T	A	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss63246552	NES17481709	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr19:32187294 () rs orientation: forward

Symbol	Name	Function Class
Cpgi10757	CpG island 10757	762 bp proximal
Gm50210	predicted gene, 50210	621 bp upstream
Rr546425	regulatory region 546425	113 bp proximal
Rr546426	regulatory region 546426	1109 bp proximal
Sgms1	sphingomyelin synthase 1	within coordinates
Tssr158859	transcription start site region 158859	239 bp downstream
Tssr158860	transcription start site region 158860	1075 bp downstream
Tssr158861	transcription start site region 158861	1122 bp downstream