rs49000408 SNP Detail

Summary

• ID
  rs49000408
• Variation Type
  SNP
• Alleles
  C/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:32114033 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CAACTGGTCA TCTCTTCTTA
  TGCCTAAACA CACTGAGCCA CTAAATAGTT ATAAAACTTG CTTAAAGATA TATGAATAGT
  CTGACTACAG AGGTCACACT CACTGTCATT GAATGGACCT TATAAACAAC GGTAATGCCA
  GCAATAGCAT CACAGTTCAC CAAGAGCTCT CTCTTCCAGC AGCTGTGGTG GTTTCATCCC
  S
  TACTCTCTTC ATTCTTACCC TCAAGGCTCC TGGAAAACAG GCTCTGTTAT TGGTCCCATT
  ATTATTACCC CTTACAAAGA AATCGAAACT TAGTAACAAG TTAAGTAACT CCAAATGTGG
  TCATTGAGGA TGAGGTCTGT CAGGTGTGTG GCTCGTAATT GCTAAGCAGT AAGGCATCGG
  TTAATGGAGC GCTGAGCAAA                                            
  
  S = C/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	PWD/PhJ	WSB/EiJ
ss60383490	NES15883103	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	G	C	G	C
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	FVB/NJ	PWD/PhJ	WSB/EiJ
rs49000408					SNP	C	C	C	C	G	C	G	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60383490	NES15883103	PERLEGEN	MM_PANEL	f	SNP	C/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:32114033 () rs orientation: forward

Symbol	Name	Function Class
Kcnmb2	potassium large conductance calcium-activated channel, subfamily M, beta member 2	within coordinates
Rr80380	regulatory region 80380	within coordinates