rs49000888 SNP Detail

Summary

• ID
  rs49000888
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:21424650 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTTCACTAGG TACACATTCA
  AGGAATACCT AACCAAAAAA GAAAGTCACC CCCACAAATT AGATGCCAGC TTTTTTTTGT
  TTTGTTTTGT TTTGTTTTGT TTTGTTTTGT TTTTTTCGAG ACAGGGTTTC TCTGTATAAC
  CCTGGCTGTC TTGGAACTCA CTCTGTAGGC CAGGCTGGCC TTGAACTCAG AAATCCGCCT
  R
  CCTCTGCCTC CCGAGTGCTG GGATTAAAGG CGTGCGCCAC CACCGCCCGG TAGATGCCAG
  CTTTTTAATA ATAGAAATGC TATGATATTT CTCTTGAGTG TCCAGGCTCC ATGTCCCCAG
  GTTTGTAACT TTAGTTGACT GCAGATTATA TTGTTTGTGT CGCCTAGCTT TTGTGCAGCT
  GAGCTATGTT TAGTAAATGC                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss137298217	ENSMUSSNP816929	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49000888					SNP	G	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:21424650 () rs orientation: forward

Symbol	Name	Function Class
Adam17	a disintegrin and metallopeptidase domain 17	1017 bp upstream
Cpgi4477	CpG island 4477	442 bp distal
Gm49586	predicted gene, 49586	303 bp downstream
Tssr112932	transcription start site region 112932	870 bp downstream
Tssr112933	transcription start site region 112933	392 bp downstream
Tssr115856	transcription start site region 115856	1157 bp upstream
Tssr115857	transcription start site region 115857	1131 bp upstream
Tssr115858	transcription start site region 115858	1103 bp upstream
Tssr115859	transcription start site region 115859	1057 bp upstream
Tssr115860	transcription start site region 115860	1032 bp upstream