rs49001407 SNP Detail

Summary

• ID
  rs49001407
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr7:29895268 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ATCAG AATTAAGTGA TAAATACATA
  R
  TAAATGGCAG CTCTTCTGTT AGTCC                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss148668742	ENSMUSSNP1077039	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A
ss322132211	CHEV_7_30980862	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49001407					SNP	G	A	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr7:29895268 () rs orientation: forward

Symbol	Name	Function Class
Capns1	calpain, small subunit 1	within coordinates
Cpgi18782	CpG island 18782	1802 bp distal
Cpgi18783	CpG island 18783	527 bp distal
Gm26810	predicted gene, 26810	within coordinates
Rr380605	regulatory region 380605	794 bp upstream
Rr400232	regulatory region 400232	1938 bp downstream
Rr400233	regulatory region 400233	507 bp downstream
Tssr65662	transcription start site region 65662	1886 bp downstream
Tssr71703	transcription start site region 71703	1810 bp upstream
Tssr71704	transcription start site region 71704	1703 bp upstream
Tssr71705	transcription start site region 71705	1681 bp upstream
Tssr71706	transcription start site region 71706	812 bp upstream
Tssr71707	transcription start site region 71707	800 bp upstream
Tssr71708	transcription start site region 71708	753 bp upstream
Tssr71709	transcription start site region 71709	618 bp upstream
Tssr71710	transcription start site region 71710	274 bp upstream