rs49001445 SNP Detail

Summary

• ID
  rs49001445
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:54242125 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        TGAGA CCACTGAGAT ACCCCACCCT
  M
  TAAGCACTGT TGTTTCAATT TTAAT                                      
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss132138613	ENSMUSSNP3057725	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	A
ss323673795	CHEV_11_54164801	CHEVERUD	SCREENING_POP	f	SNP				C	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49001445					SNP	C	C	A	C	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:54242125 () rs orientation: forward

Symbol	Name	Function Class
Acsl6	acyl-CoA synthetase long-chain family member 6	within coordinates
Gm12224	predicted gene 12224	within coordinates
Rr246748	regulatory region 246748	1875 bp proximal
Tssr107987	transcription start site region 107987	1948 bp downstream
Tssr107988	transcription start site region 107988	1987 bp downstream