rs49002216 SNP Detail

Summary

• ID
  rs49002216
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:127271928 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTACTGTTTA ATTCTGTTTT
  TAAGATTGGA ATAGGGAGCT GGAGAAATGG CTCAGGGGTT AGTGGCTTAC TGGCTGCTCT
  TCCAGAGGTC CCAAGTTCCC AACATCAACA AGGCAGCTCA CAACTGTCTA TAACTCCAGC
  TACCAGGGTA CTGATGCCCT CTTCACAAAT ATACATGCAG GAAAAATATT ACATATAAAA
  Y
  AAATTTTAAA TTGTAATCAT ATTTAATAAT AGTGAAAACA CTTAAAACAA ATTTTAACTA
  TTATCAGTGA CATTACACAA GGGAACTTTT TTTTTTTTTT GGTTTTTCAA GACAGGGTTT
  CTCTGTATAG CCCTGGTTGT CCTGGAACTC ACTTTGTAGA TTCAGAAATC CGCCTGCCTC
  TGCCTACCAA GTGCTGGGAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135864348	ENSMUSSNP6951906	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
ss320954463	CHEV_3_127181197	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49002216					SNP	T	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:127271928 () rs orientation: forward

Symbol	Name	Function Class
Ank2	ankyrin 2, brain	within coordinates
Gm42525	predicted gene 42525	1900 bp downstream
Gm43355	predicted gene 43355	1156 bp downstream