rs49002312 SNP Detail

Summary

• ID
  rs49002312
• Variation Type
  SNP
• Alleles
  A/C

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:74858504 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGACCTCTAG GTTTGGCAGC
  AAGCACATTT TACCACCTAA GCCATTTTGT CAGCCCATTT TTTCTGTTCT TTATATGTCT
  AACAAAATAA GCCTGGGATA GGGGGTGATG GGTCACACCT CTTGTTGTGT CTTCATCTAT
  ATTCCACAAC ATTCTACATA TTCTACAATA GCTGTTGTCT GACTCCAGAT GTTGTGCTAA
  M
  TTAAGTATTG CGGACTATCT ATGACTGTTC TGTATATCTT CCATTACCAA GGTTAACCAG
  GAAGTGATCT CAAAACAAAT CAAACTTTTG CCCCGTTTTT AAACCACATA AGACCTTATT
  AAATAGTACC CATGGGAAGT CTACCAGGAG TTAATGTTTG TAGCCATCAC TATATCAACA
  AAGTCTTCCC ATTGTCCAAA                                            
  
  M = A/C
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss136638868	ENSMUSSNP3453404	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		A
ss323007468	CHEV_9_74799029	CHEVERUD	SCREENING_POP	f	SNP			A		C
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs49002312					SNP	C	C	A	A	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:74858504 () rs orientation: forward

Symbol	Name	Function Class
Atosa	atos homolog A	1658 bp upstream
Cpgi22037	CpG island 22037	1262 bp proximal
D9Mit1008	DNA segment, Chr 9, Massachusetts Institute of Technology 1008	250 bp distal
Gm68252	predicted gene, 68252	565 bp downstream
Rr401515	regulatory region 401515	614 bp upstream
Rr401516	regulatory region 401516	1507 bp upstream
Rr683033	regulatory region 683033	403 bp proximal
Rr683034	regulatory region 683034	493 bp proximal
Rr683035	regulatory region 683035	863 bp proximal
Rr683036	regulatory region 683036	1585 bp proximal
Rr683037	regulatory region 683037	1876 bp proximal
Tssr86114	transcription start site region 86114	1630 bp upstream
Tssr86115	transcription start site region 86115	1852 bp upstream
Tssr86116	transcription start site region 86116	1934 bp upstream