rs49003238 SNP Detail

Summary

• ID
  rs49003238
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172155276 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTGG CAATAGGAGA TTGGGGGCCA
  Y
  GCGTGAGGTC AACTGCCCAC GGCAA                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss120012406	PARCsnp_1.08470	PARC_SEQ	INBRED	f	SNP			T	C
ss146188045	ENSMUSSNP1062327	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
ss320124237	CHEV_1_174257840	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs49003238					SNP	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172155276 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1043	CpG island 1043	754 bp distal
Gm70847	predicted gene, 70847	783 bp downstream
Kcnj9	potassium inwardly-rectifying channel, subfamily J, member 9	within coordinates
Rr423527	regulatory region 423527	1419 bp distal
Rr423528	regulatory region 423528	1791 bp distal
Rr423529	regulatory region 423529	1376 bp distal
Rr423530	regulatory region 423530	849 bp distal
Rr423531	regulatory region 423531	509 bp proximal
Rr423532	regulatory region 423532	1563 bp proximal
Tssr15210	transcription start site region 15210	1484 bp upstream
Tssr15211	transcription start site region 15211	1471 bp upstream
Tssr15212	transcription start site region 15212	1454 bp upstream
Tssr15213	transcription start site region 15213	1552 bp downstream
Tssr15214	transcription start site region 15214	1608 bp downstream