rs49004440 SNP Detail

Summary

• ID
  rs49004440
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr12:52846820 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TCTGGTGTCG TTGTACACGT
  GTCCTCCATG TCACCCTTTC GTCGCACTCT ACATACATTC AAAATGATAA AGCACGTAGC
  CCAGGGTGTC AGTGGAGATT TACCAGGACA CCCTTGTAAA GCAGCTCCTA GATGAGACTG
  TGGCAAAGCA GGGGGCAGAT CCACCTTGGG TTCATGGTCT CAGCTTCATA TTACTGCTTC
  R
  GTCCATTAGT TGATTTATTA ATTTACAGTG GAACGTAATC GTCAGGACAG GGGTGCCCAT
  GACCTTGAAG ACCATCTGTG TACAGAAAAA TGCCAGTTTT GTGCATCTAT TCCAATGTTT
  CCCTAATGGT CCAAACCCAA GTTTCTTACC TGGTTACTCT GCTCATGTCT TAGTAGGAGT
  CTCAAGCTGG GGATGTCCGT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss52422056	NES15408858	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	A	G	G	G		G	G	G	G		A
ss324040940	CHEV_12_53901024	CHEVERUD	SCREENING_POP	f	SNP											A					A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs49004440					SNP	G	G	G	G	G	G	A	G	G	G	A	G	G	G	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52422056	NES15408858	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:52846820 () rs orientation: forward

Symbol	Name	Function Class
Akap6	A kinase anchor protein 6	Intron
Gm51971	predicted gene, 51971	within coordinates
Gm59837	predicted gene, 59837	within coordinates
Rr466054	regulatory region 466054	29 bp distal