rs49004530 SNP Detail

Summary

• ID
  rs49004530
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:48821537 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGTAAACTA AAAACTGGTT
  CTAGGTACCA GTCTGTTAGT TAACTTGAGT TCAACCTTAG GTCAAGTTCT CTAAGATGGA
  GTCTGAACCC AAAAGGTTTG TTCTGTATGT CTTAGGCTAC ACAGTACATT TGAAGTTGGT
  CTGGGTTATG TGGGCGTGGT GGCGCACACC TTTAATCCCA GCACTCAGGA GGCAGAGGCA
  K
  GTGGATTTCT GAGTTCGAGG CCAGTCTGGT CTACATAGTG AGTTCCAGGA CAGCCAGGGT
  GATACAGAGA AACCCTGTCT CAAAAAAACC AAAAAAAAAA AAAAAAAAAA AAGAGACCCT
  GTTTCAAGAT GAAAAACAAA CTCCCAAGTT GTCTATGCTC TGTTATATTC AAACCATTGT
  AATTTGAGAA CAGGGGGAAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss146280769	ENSMUSSNP5659265	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs49004530					SNP	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:48821537 () rs orientation: forward

Symbol	Name	Function Class
Gm52718	predicted gene, 52718	within coordinates
Rr376450	regulatory region 376450	120 bp upstream