rs49004876 SNP Detail

Summary

• ID
  rs49004876
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr11:11506647 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GTTCT CAAGCTCCAT TCATTGTTTG
  R
  CTATGGGTGT CTGTATCTGT CTGAA                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss131686827	ENSMUSSNP5598441	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G	A
ss323561262	CHEV_11_11456650	CHEVERUD	SCREENING_POP	f	SNP				G	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49004876					SNP	A	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr11:11506647 () rs orientation: forward

Symbol	Name	Function Class
Gm11998	predicted gene 11998	763 bp upstream
Gm29945	predicted gene, 29945	within coordinates
Rr402417	regulatory region 402417	537 bp upstream
Rr442717	regulatory region 442717	179 bp proximal
Rr442718	regulatory region 442718	664 bp proximal
Rr442719	regulatory region 442719	782 bp proximal
Rr442720	regulatory region 442720	1196 bp proximal
Rr442721	regulatory region 442721	1309 bp proximal
Rr442722	regulatory region 442722	1905 bp proximal
Tssr100349	transcription start site region 100349	741 bp upstream
Tssr100350	transcription start site region 100350	754 bp upstream
Tssr100351	transcription start site region 100351	1285 bp upstream
Tssr100352	transcription start site region 100352	1360 bp upstream