rs49004942 SNP Detail

Summary

• ID
  rs49004942
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  ChrX:111860834 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CACTGTATTT AGTGGGTCCC
  ATATAAAGAT GAAACCATAT TTCCTTCACC AACTTCATTT TTAAAAAAAT GGTGCCCTGA
  CCTTCAAAAA AAGGCTTACT TTCACCCACT TCAGCAAAGA CTAGCTTGTA AACCAAGACA
  TTGGCTCATT ACTATATATA ATGATAGCTA CACTTCACAA ATAGAGCACA ATCATTTATC
  K
  ATCCAACCCA CTCTCTCCTT GCTGGCAAAT CAAAACATGA TCAGAAGTTT GTTTGGCAAG
  TTCAGACAAA ATAGAATGAT CTGTGTGATT TGGCTGACTA GTAATCTCAA AAGCTGTGTC
  TACACTTTGC CAGATCACAA AATGCAAATG AGCTATCCAT GATTCATTAT TCAGTACCAC
  ACTCCATGAA ATGAGGATAA                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	LG/J	SM/J
ss134277764	ENSMUSSNP5426346	ENSEMBL	ENSEMBL_Sanger	f	SNP	T
ss325913357	CHEV_X_110064746	CHEVERUD	SCREENING_POP	f	SNP		T	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	LG/J	SM/J
rs49004942					SNP	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: ChrX:111860834 () rs orientation: forward

Symbol	Name	Function Class
Rr2637	regulatory region 2637	834 bp distal
Rr6449	regulatory region 6449	1082 bp distal