rs49005047 SNP Detail

Summary

• ID
  rs49005047
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:135765842 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTAATTCACC TGGCTTAGGT
  GTGGTCCTCT GTGGGAGCAC TTCTTAGTGC TCTCAGTGCT CTTTTGGGAT GCATTTCCTG
  GTGTTCCCGG GGACAGGAAC CAAGGTGTTC CCACTTCTTC TCATCTGCCC CAGTGATTGT
  AAGCTTGTGG GAGGGCAGGA GAGAAGCCCT GGGGCAGCCA CACACCTCCC ACTTCCAGAT
  Y
  GTTCCCCTCA TCCCCATCCC AGGCAATGGT CTCCTCCTCA CAGGTCCTGA TAGCTCCCCC
  TGGGGTCTGG ACAAGGTGAG TCTACACTAC CAGACTCCTG GACTCAGGAG TGGCCGTGCT
  CATCCCGAGG TCTACGTGGA GGTCATTTGG TATCCAAATC TTCTCACTAG AACACAGCTC
  CACCCACTGT TAAGACACCT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss145548044	ENSMUSSNP5132672	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs49005047					SNP	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:135765842 () rs orientation: forward

Symbol	Name	Function Class
Rr419294	regulatory region 419294	1681 bp distal
Rr419295	regulatory region 419295	1372 bp distal
Rr419296	regulatory region 419296	519 bp distal
Rr419297	regulatory region 419297	within coordinates
Tnnt2	troponin T2, cardiac	within coordinates
Tssr9005	transcription start site region 9005	1708 bp downstream
Tssr9006	transcription start site region 9006	306 bp upstream
Tssr9007	transcription start site region 9007	803 bp upstream