rs49005440 SNP Detail

Summary

• ID
  rs49005440
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr10:24791631 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GGGAGGAGAA GGCGTTTGCT
  TAGTTCTGTC TGCTTTGCTG TGATGCCCCA GATGGTTTTC ATGTGGCGCA TTCACAGTCA
  CTTAGGTGGT TTAAGGTAGT CAGTCCCTGG CTTATGGTTA CCCTCCCGTT GAGTTCCGAA
  GCAAGCCAAG GTTAAAGCCA CTGCCGTGTT CACAGTACTC TTCACCTCCT CTGCTGTCTT
  Y
  CCAAGAGTTG GGTTCACTTC CATGATATCT AGTCCTGAAA GGAGCCCTAC AACAAAAAAA
  GGAAGGCATA GTGACATAGT TGATCAACGT AACTGACATT TTAAAGTCTG TGACCCCTGA
  CTCCCAAATG TATCTGTGAA GAAGAGCTGG TGACTAACAG TAAACAGGTT GTGTGTCACA
  TCATGTGACG GGTAATCGAG                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61262552	NES16880310	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	T	C	C	C	T	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49005440					SNP	C	C	C	C	C	T	C	C	C	T	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61262552	NES16880310	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:24791631 () rs orientation: forward

Symbol	Name	Function Class
Arg1	arginase, liver	Coding-Synonymous
Tssr92746	transcription start site region 92746	96 bp downstream
Tssr92747	transcription start site region 92747	6 bp downstream
Tssr97085	transcription start site region 97085	240 bp upstream
Tssr97086	transcription start site region 97086	178 bp upstream
Tssr97087	transcription start site region 97087	152 bp upstream
Tssr97088	transcription start site region 97088	92 bp upstream
Tssr97089	transcription start site region 97089	77 bp upstream
Tssr97090	transcription start site region 97090	46 bp upstream
Tssr97091	transcription start site region 97091	338 bp downstream
Tssr97092	transcription start site region 97092	358 bp downstream
Tssr97093	transcription start site region 97093	382 bp downstream
Tssr97094	transcription start site region 97094	398 bp downstream
Tssr97095	transcription start site region 97095	412 bp downstream
Tssr97096	transcription start site region 97096	677 bp downstream
Tssr97097	transcription start site region 97097	951 bp downstream
Tssr97098	transcription start site region 97098	1099 bp downstream