rs49005750 SNP Detail

Summary

• ID
  rs49005750
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:74859266 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACATATAAG TACCGTTATT
  TTATTTTTAG GGTCTTGTGC ATGCTAGGCA AGCACTTTAC CACTGATCAG TAGTCCAAGC
  CTCACACATA CATGAAAAAT AAAATCTTTA CATTATCATC ATCATCATCA ACAACAATAA
  ATAAAATTGC CAATCTTGTG CTTTACAAAA ACTGTGGGTT AAAAAAATAA CCCTCTAAAA
  W
  TGTAGAAACG GAAAACTATA GAGAGAGTCG ACCACAGATG ATCTTAGTCC TTCCTGTTGT
  GATTCTCATA TGCAAAAAGA AAAAAAAAAG GTTCTTAAAA AAGCATGTTT TTTTCCCAAT
  GAAACTAGAC CCTTGCAATT TTGTACTTCT TCATTTGGGT TTGCCTATAA ACTGAGTGGC
  TAATAGCTGC AACCCTTGTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss136638886	ENSMUSSNP4123556	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	A	A
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49005750					SNP	T	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:74859266 () rs orientation: forward

Symbol	Name	Function Class
Atosa	atos homolog A	896 bp upstream
Cpgi22037	CpG island 22037	500 bp proximal
D9Mit1008	DNA segment, Chr 9, Massachusetts Institute of Technology 1008	1012 bp distal
Gm68252	predicted gene, 68252	within coordinates
Rr401515	regulatory region 401515	within coordinates
Rr401516	regulatory region 401516	745 bp upstream
Rr683033	regulatory region 683033	162 bp distal
Rr683034	regulatory region 683034	248 bp distal
Rr683035	regulatory region 683035	101 bp proximal
Rr683036	regulatory region 683036	823 bp proximal
Rr683037	regulatory region 683037	1114 bp proximal
Tssr86114	transcription start site region 86114	868 bp upstream
Tssr86115	transcription start site region 86115	1090 bp upstream
Tssr86116	transcription start site region 86116	1172 bp upstream
Tssr86117	transcription start site region 86117	1577 bp upstream