rs49006295 SNP Detail

Summary

• ID
  rs49006295
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr16:11022946 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AGTACTCTTG ACACCATCTC
  TCCAGCCCCA AGCACCAGAC TTTTGAGCCA AGGAAATTCC ATGAATTCAG ATGATAGATC
  CTTGAGGCGA TTGGAAACAG TAAGTGTCTA GAGCCAAAGA ATTGCAAAAT TGAAGAAATA
  GGCTTTTAAA ACTGACAGGG GGCCTAGTTA CCAAACTTCA CTTACATTCT GGGCTACAGA
  R
  CAATACTCTC ATCTCAGTGT CATTTCTGAA ATTAGACTTA TGATTACTGT TAGGCGTGTA
  ATTTTTGTCT TTACAACTCC CTCTCATTCA CTCATTTGTA AGGTGGCCCT CCCTAGAGAG
  AGGGAAGCCA GATGCTATGC TGTGAGACTA CGTGGGCAGC CAGCTAGTAA CCACATGCAT
  GAAGGTGGAA GGAAAGCCTT                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss52593810	NES15688347	PERLEGEN	MM_PANEL2	f	SNP	A	A	A	A	A	A	G	A	A	A	A	A	A
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs49006295					SNP	A	A	A	A	A	A	G	A	A	A	A	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52593810	NES15688347	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:11022946 () rs orientation: forward

Symbol	Name	Function Class
2610020C07Rik	RIKEN cDNA 2610020C07 gene	within coordinates
Cpgi7962	CpG island 7962	1230 bp distal
Gm60496	predicted gene, 60496	within coordinates
Rr404684	regulatory region 404684	1563 bp downstream
Rr511717	regulatory region 511717	1682 bp distal
Rr511718	regulatory region 511718	702 bp distal
Rsl1d1	ribosomal L1 domain containing 1	1790 bp upstream
Tssr137080	transcription start site region 137080	1634 bp downstream
Tssr140008	transcription start site region 140008	1770 bp upstream