rs49007873 SNP Detail

Summary

• ID
  rs49007873
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:172154680 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGGTTAAGA AAAAGTTGTA
  TGGCTGGAGA GGTGGCTCAG CGGGGTTAAG AGCGCTGCCT GCACTTCCAG AGGTTCTGAG
  TTCAATTCCC AGCAACCACC TGGTGGCTTA CAACAATCTG TAATGGGATC TTAGGCCCTC
  TTCTGATGTG TCTGAAGACA GCGGCAGTGT AATCATATAC ATTAAGTAAA TAAATCTTTT
  W
  AAAAAAGAAT AAAGAATTAT GAGAGAGAGA GAGAGAGAGT TGTACAGATT ACACAGATAA
  AGAGCACAAA CTGGGTGTCG AAGTTCAATA AGAGGCATTA GCCATCTCGA TGTCACAGAT
  CTCAGCGTCA CTACCTCAAG CTGGTGTATG TAGCAACTCA CAGGCACCCC GGATCAGACA
  TTTAGGGTAC TGAAGAGGTA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss120012398	PARCsnp_1.08466	PARC_SEQ	INBRED	f	SNP		A	T
ss146188022	ENSMUSSNP1726989	ENSEMBL	ENSEMBL_Sanger	f	SNP	T		T
ss320124233	CHEV_1_174257244	CHEVERUD	SCREENING_POP	f	SNP				T	T
SNP Consensus Information
SNP					Consensus Type	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs49007873					SNP	T	A	T	T	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:172154680 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1043	CpG island 1043	158 bp distal
Gm70847	predicted gene, 70847	187 bp downstream
Kcnj9	potassium inwardly-rectifying channel, subfamily J, member 9	within coordinates
Rr423524	regulatory region 423524	1733 bp distal
Rr423526	regulatory region 423526	1997 bp distal
Rr423527	regulatory region 423527	823 bp distal
Rr423528	regulatory region 423528	1195 bp distal
Rr423529	regulatory region 423529	780 bp distal
Rr423530	regulatory region 423530	253 bp distal
Rr423531	regulatory region 423531	1105 bp proximal
Tssr15210	transcription start site region 15210	888 bp upstream
Tssr15211	transcription start site region 15211	875 bp upstream
Tssr15212	transcription start site region 15212	858 bp upstream