rs49008536 SNP Detail

Summary

• ID
  rs49008536
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr16:94070632 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCAGACATG GGTAAACCCA
  ACGTTCCTTT TGTGACAGGC ACAGGACCCT CCTGAGAGTC CAGAAAATCC AATAATGTAA
  AAGGAAACCT GACCCCCAGC TATTTTCAAG AAGTGGGGGG CCAGCTGCAA AGATCTACCT
  GATGGCACAT CAGATCTCCA TTCCCAGAAT CCTAACCTTC CAACAGGCAC CGGTTACCAC
  R
  GGAAGACACC ACAGACAGTT CACAAGCCCA CCACTAGAGG GCGAGAGACA CGCAGAGAGA
  AAAGCCTTCC AGTTTTGTAT GGAAACGTCT CACACACAAT CTCCGAAGAT TCCCAGGGGA
  GCCTGGCTGC AGAGTCTGGA CTCAGACTCC ACTTCCCGCG CTGCGCAAGC ATCTGCACCA
  CAACCCTCTT TGTAAAGCAG                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60515985	NES16526714	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49008536					SNP	G	G	G	G	G	G	G	G	G	G	G	G	G	A	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60515985	NES16526714	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr16:94070632 () rs orientation: forward

Symbol	Name	Function Class
D16Jhu35	DNA segment, Chr 16, Johns Hopkins University 35	864 bp proximal
Hlcs	holocarboxylase synthetase (biotin- [propriony-Coenzyme A-carboxylase (ATP-hydrolysing)] ligase)	Intron
Rr370146	regulatory region 370146	within coordinates
Rr520089	regulatory region 520089	1997 bp distal
Rr520090	regulatory region 520090	526 bp distal
Rr520091	regulatory region 520091	420 bp distal
Rr520092	regulatory region 520092	within coordinates
Rr520093	regulatory region 520093	27 bp proximal
Rr520094	regulatory region 520094	331 bp proximal