rs49009499 SNP Detail

Summary

• ID
  rs49009499
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:48041225 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCCCG AGACGAGATG AAACGCTGTT
  Y
  GTAGGACGGG TGTCAGCACA GTGAG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss145709006	ENSMUSSNP3030137	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	C	C
ss325406554	CHEV_17_47867249	CHEVERUD	SCREENING_POP	f	SNP				T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49009499					SNP	T	C	C	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48041225 () rs orientation: forward

Symbol	Name	Function Class
Pgc	progastricsin (pepsinogen C)	within coordinates
Rr528106	regulatory region 528106	409 bp proximal
Tssr5147	transcription start site region 5147	1549 bp downstream
Tssr5148	transcription start site region 5148	987 bp upstream
Tssr5149	transcription start site region 5149	1183 bp upstream
Tssr145004	transcription start site region 145004	1558 bp downstream
Tssr145005	transcription start site region 145005	1537 bp downstream
Tssr145006	transcription start site region 145006	1508 bp downstream
Tssr145007	transcription start site region 145007	1476 bp downstream
Tssr145008	transcription start site region 145008	1455 bp downstream
Tssr145009	transcription start site region 145009	1427 bp downstream
Tssr145010	transcription start site region 145010	1045 bp downstream
Tssr145011	transcription start site region 145011	1026 bp downstream
Tssr145012	transcription start site region 145012	1009 bp downstream
Tssr145013	transcription start site region 145013	957 bp downstream
Tssr145014	transcription start site region 145014	163 bp downstream
Tssr145015	transcription start site region 145015	148 bp downstream
Tssr145016	transcription start site region 145016	144 bp downstream
Tssr145017	transcription start site region 145017	298 bp upstream
Tssr145018	transcription start site region 145018	310 bp upstream
Tssr145019	transcription start site region 145019	341 bp upstream
Tssr145020	transcription start site region 145020	362 bp upstream
Tssr145021	transcription start site region 145021	388 bp upstream
Tssr145022	transcription start site region 145022	420 bp upstream
Tssr145023	transcription start site region 145023	447 bp upstream
Tssr145024	transcription start site region 145024	558 bp upstream
Tssr145025	transcription start site region 145025	902 bp upstream
Tssr145026	transcription start site region 145026	1158 bp upstream
Tssr148459	transcription start site region 148459	1499 bp upstream
Tssr148460	transcription start site region 148460	1447 bp upstream
Tssr148461	transcription start site region 148461	1435 bp upstream
Tssr148462	transcription start site region 148462	1392 bp upstream
Tssr148463	transcription start site region 148463	1019 bp upstream
Tssr148464	transcription start site region 148464	934 bp upstream
Tssr148465	transcription start site region 148465	173 bp upstream
Tssr148466	transcription start site region 148466	139 bp upstream
Tssr148467	transcription start site region 148467	329 bp downstream
Tssr148468	transcription start site region 148468	360 bp downstream
Tssr148469	transcription start site region 148469	450 bp downstream