rs49010347 SNP Detail

Summary

• ID
  rs49010347
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:85870009 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TACACTTATA TGTGCCCCAA
  GTATATAACA TCTTATTTCA CTCACTCCCT ACATCAGGAT AGGCAGGCAC TATTAGTATT
  TCCACTTTAC AGATGGGGAT CAGAACCAAG AGCTAAGTGA TTTGCTTAGG TAACATAGCT
  AATATGTGGC TGAGTGCCAG GGTCTGTGGA CTCTGTTGCA ATACTCCCTC ATAGAATGTT
  Y
  TGATAAAGTT CTCATCTTTT AAAAAATATT TACTTATTTA TTTATTTAGA GACAGGGTCT
  TACTATGTGG CTAGTCTGGA ACTCTACATA GATCAGGCTG GCCTGGAACT CACAGAGATC
  CATCTGCCTC TTCCTCCTGA GTGCTGGGAT TAAAGGTGGG TGCGGCCAGG TGCAGCAAAG
  TTCCCATTTT TTGAGGAAGC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
ss52451573	NES15428294	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	WSB/EiJ
rs49010347					SNP	T	T	T	T	T	T	T	T	T	T	C	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss52451573	NES15428294	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:85870009 () rs orientation: forward

Symbol	Name	Function Class
Cpgi4904	CpG island 4904	1232 bp proximal
Erg28	ergosterol biosynthesis 28	within coordinates
Rr258254	regulatory region 258254	809 bp distal
Rr265707	regulatory region 265707	208 bp distal
Rr265708	regulatory region 265708	within coordinates
Rr268757	regulatory region 268757	1409 bp distal
Tssr114435	transcription start site region 114435	1398 bp upstream
Tssr114436	transcription start site region 114436	1683 bp upstream
Tssr117107	transcription start site region 117107	1261 bp downstream
Tssr117108	transcription start site region 117108	1271 bp downstream
Tssr117109	transcription start site region 117109	1325 bp downstream
Tssr117110	transcription start site region 117110	1610 bp downstream
Ttll5	tubulin tyrosine ligase-like family, member 5	1408 bp upstream