rs49011085 SNP Detail

Summary

• ID
  rs49011085
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:68914105 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TATAAAGTGT GTCAGTGTTG
  GGTGACGCGG GCATATGTAC ATGAGTGCAG GTGCCCCTGG AGGGCATGAA CCTCGAGCAT
  CCCATTGTGG GTGCTGAAAA CCAAACTTGG GTTCTACACA AGAAAAAAAT TGCTGGGCCC
  CCTAGATTGC CTTTAAAGAG AAGGTATAAT TGAGAGCGTA GAGCAGGCGG AGGGTAGAAA
  Y
  TAAGAGCTAC TGTGAAATTC CTGTCACCAT GTTACTGAAG TTTGTGAGTT TCTTAAGCTG
  AGCCATGTGG AGAGTTGGAT TTTCGATTGT TAGGGTTGCA TCTCCTGCAT CAGGGAATCC
  GTTTGTTGCA AGGTTTTCTT TATGGTATAT TGAGTATTTT GACTCCTCTA AGTACAATGT
  GTATACCACA CATTTTGTGA                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	DBA/2J	MSM/Ms
ss135264511	ENSMUSSNP3043434	ENSEMBL	ENSEMBL_Sanger	f	SNP	T	T	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	DBA/2J	MSM/Ms
rs49011085					SNP	T	T	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:68914105 () rs orientation: forward

Symbol	Name	Function Class
Cpgi13255	CpG island 13255	285 bp distal
Rr397713	regulatory region 397713	1983 bp downstream
Smc4	structural maintenance of chromosomes 4	within coordinates
Tssr29507	transcription start site region 29507	1751 bp downstream
Tssr29508	transcription start site region 29508	1630 bp downstream
Tssr29509	transcription start site region 29509	1459 bp downstream
Tssr29510	transcription start site region 29510	1418 bp downstream
Tssr29511	transcription start site region 29511	1287 bp downstream
Tssr29512	transcription start site region 29512	1030 bp downstream
Tssr29513	transcription start site region 29513	826 bp downstream
Tssr29514	transcription start site region 29514	700 bp downstream
Tssr33522	transcription start site region 33522	343 bp upstream