rs49011476 SNP Detail

Summary

• ID
  rs49011476
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr4:155923623 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGCGAGGGGG TTGTCTGTTC TTTTGGAGAA GGGTAACATC
  ATGTGTAGCT GTGGCTGGTC TGAAACTCAC TATGAAGAGC AGGTTTGCCT CAAACTCAGC
  G
  ATTCAAGCGC TGAATTCATG GTGGGGGCCA ACATGCCTGG CTGGATGATT GGCTGTTCCC
  GCTCCTAAAG AAATCTGGAC CACAATGCCA TCATGTTGT                       
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J
ss148117574	ENSMUSSNP4545673	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J
rs49011476					SNP	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr4:155923623 () rs orientation: forward

Symbol	Name	Function Class
Cpgi15490	CpG island 15490	1646 bp proximal
Gm68629	predicted gene, 68629	within coordinates
Mxra8	matrix-remodelling associated 8	514 bp upstream
Mxra8os	matrix-remodelling associated 8, opposite strand	326 bp downstream
Rr606588	regulatory region 606588	931 bp distal
Rr606589	regulatory region 606589	70 bp proximal
Rr606590	regulatory region 606590	1002 bp proximal
Rr606591	regulatory region 606591	1918 bp proximal
Rr606592	regulatory region 606592	1945 bp proximal
Rr606593	regulatory region 606593	1981 bp proximal
Tssr40724	transcription start site region 40724	509 bp upstream
Tssr40725	transcription start site region 40725	527 bp upstream
Tssr40726	transcription start site region 40726	558 bp upstream
Tssr40727	transcription start site region 40727	603 bp upstream
Tssr40728	transcription start site region 40728	661 bp upstream
Tssr40729	transcription start site region 40729	1935 bp upstream
Tssr40730	transcription start site region 40730	1955 bp upstream
Tssr40731	transcription start site region 40731	1980 bp upstream
Tssr44980	transcription start site region 44980	1862 bp downstream
Tssr44981	transcription start site region 44981	1928 bp downstream