rs49011958 SNP Detail

Summary

• ID
  rs49011958
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:98764716 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        ACGGG GGAGACTGTT GAATGACTTC
  Y
  CTCTGCCAAA CCACACTAGA AAAGG                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135527828	ENSMUSSNP5734277	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	T
ss320845391	CHEV_3_98661323	CHEVERUD	SCREENING_POP	f	SNP			C	T
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49011958					SNP	C	T	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:98764716 () rs orientation: forward

Symbol	Name	Function Class
Gm65690	predicted gene, 65690	within coordinates
Hsd3b1	hydroxy-delta-5-steroid dehydrogenase, 3 beta- and steroid delta-isomerase 1	within coordinates
Rr1170	regulatory region 1170	1770 bp distal
Rr581745	regulatory region 581745	1535 bp distal
Rr581746	regulatory region 581746	within coordinates
Tssr979	transcription start site region 979	514 bp downstream
Tssr980	transcription start site region 980	901 bp downstream
Tssr981	transcription start site region 981	927 bp downstream
Tssr34711	transcription start site region 34711	1319 bp upstream
Tssr34712	transcription start site region 34712	520 bp downstream
Tssr34713	transcription start site region 34713	567 bp downstream
Tssr34714	transcription start site region 34714	606 bp downstream
Tssr34715	transcription start site region 34715	700 bp downstream
Tssr34716	transcription start site region 34716	723 bp downstream
Tssr34717	transcription start site region 34717	783 bp downstream
Tssr34718	transcription start site region 34718	843 bp downstream
Tssr34719	transcription start site region 34719	889 bp downstream
Tssr34720	transcription start site region 34720	910 bp downstream