rs49012132 SNP Detail

Summary

• ID
  rs49012132
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr10:125143276 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        AGGGAAAGTC ACTCTATATA ACTTGTGAGG CTTTAAAAAC
  ATTTCTCAAG ATTACATAAT GAATGCATGT TATTTTTCTA TTATAAGCTT TATAAATAAA
  R
  GTGCTAAAAT ATAAAACTCT AATATGCACA TATAAATCTG TTTCTTTGTA AGATGTTTGT
  AGTCAGTTGT AGGTAATTCT ATTTGGATTA AAAGAGCTG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
ss147698310	ENSMUSSNP6271683	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A	A		A
ss323523495	CHEV_10_124744463	CHEVERUD	SCREENING_POP	f	SNP				A		G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	MSM/Ms	SM/J
rs49012132					SNP	G	A	A	A	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr10:125143276 () rs orientation: forward

Symbol	Name	Function Class
Gm45604	predicted gene 45604	1462 bp upstream
Slc16a7	solute carrier family 16 (monocarboxylic acid transporters), member 7	within coordinates
Tssr96086	transcription start site region 96086	1561 bp upstream
Tssr96087	transcription start site region 96087	1589 bp upstream
Tssr99673	transcription start site region 99673	1385 bp downstream
Tssr99674	transcription start site region 99674	1398 bp downstream
Tssr99675	transcription start site region 99675	1402 bp downstream
Tssr99676	transcription start site region 99676	1436 bp downstream