rs49012409 SNP Detail

Summary

• ID
  rs49012409
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:160828699 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                    ctgcccggc GAATTTTTTT TCTTTTTGTT
  GAtttgtgtt ttgagaaaag ttttcttcct gtagccctgg ccatcttgaa acttgttGAG
  AATCTGTTTC TTAACACAGA TCCTTGGGAG ATTTTTATAA GTAGGTTCGA GGTCCAGTGG
  Y
  GTAGGCTGTT CTTCGTGGAA GCTAAGACTG TGAGCAGAAG GGCCAACGAT AGACAAAGCT
  AACAGGACTT GGGTTTGCAA AGAAAGGCTG CAATTAGAGA GAAATATCCA GAGTATGGTG
  CCAGAGAACT AATTCTAGGA TCCAAGCAAG                                 
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60334239	NES15837009	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	C	T	T	T	T	C		T	T	T	T		T
ss320080076	CHEV_1_162931260	CHEVERUD	SCREENING_POP	f	SNP											T					C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs49012409					SNP	T	T	T	T	C	T	T	T	T	C	T	T	T	T	T	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60334239	NES15837009	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:160828699 () rs orientation: forward

Symbol	Name	Function Class
Gm37072	predicted gene, 37072	within coordinates
Serpinc1	serine (or cysteine) peptidase inhibitor, clade C (antithrombin), member 1	within coordinates
Tssr9670	transcription start site region 9670	697 bp upstream
Zbtb37	zinc finger and BTB domain containing 37	1793 bp downstream