rs49015332 SNP Detail

Summary

• ID
  rs49015332
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:164509210 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGTTAAGCA TGGTGGCCTC CCTTTTCTAA AAAGATAATA
  AGGATCAAAG CATTATGCAC AAGTTCACTG TGACCTGAGG GAGTTAAAGA ATCTTCTAGG
  R
  GAGATTGACT TCTGAAGAGC GTGCCAAGTA GCACCCCAGA GGCTGCTGAA CACCAGGGCA
  CCATTTCCTT CCTCTCAGAA GCCTCTTCTG TGCTGTGCC                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	PWD/PhJ
ss60336400	NES15836018	PERLEGEN	MM_PANEL2	f	SNP			A	A	A	A	A	G	A	A
ss145984908	ENSMUSSNP3387887	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A						G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	KK/HlJ	PWD/PhJ
rs49015332					SNP	A	A	A	A	A	A	A	G	A	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60336400	NES15836018	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:164509210 () rs orientation: forward

Symbol	Name	Function Class
Gm37184	predicted gene, 37184	293 bp upstream
Gm37853	predicted gene, 37853	within coordinates
Rr422252	regulatory region 422252	within coordinates