rs49015653 SNP Detail

Summary

• ID
  rs49015653
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:171974767 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        GGGAA AATGAGTGGG AAGGGGGCCA
  Y
  GAAGAAACAG GCATGACACA TACAT                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
ss120006863	PARCsnp_1.17509	PARC_SEQ	INBRED	f	SNP			T	C
ss120009735	PARCsnp_1.07135	PARC_SEQ	INBRED	f	SNP			T	C
ss146182852	ENSMUSSNP3998297	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C		C
ss320122954	CHEV_1_174077331	CHEVERUD	SCREENING_POP	f	SNP					C	C
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	C57BL/6J	DBA/2J	LG/J	SM/J
rs49015653					SNP	C	C	T	C	C	C

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:171974767 () rs orientation: forward

Symbol	Name	Function Class
Cpgi1037	CpG island 1037	637 bp proximal
Dcaf8	DDB1 and CUL4 associated factor 8	807 bp upstream
Gm70088	predicted gene, 70088	529 bp downstream
Rr372457	regulatory region 372457	92 bp upstream
Rr423469	regulatory region 423469	within coordinates
Rr423470	regulatory region 423470	777 bp proximal
Rr423471	regulatory region 423471	989 bp proximal
Tssr10170	transcription start site region 10170	837 bp upstream
Tssr10171	transcription start site region 10171	858 bp upstream
Tssr10172	transcription start site region 10172	898 bp upstream
Tssr10173	transcription start site region 10173	910 bp upstream
Tssr15148	transcription start site region 15148	723 bp downstream