rs49016476 SNP Detail

Summary

• ID
  rs49016476
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  142
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr12:112641566 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CTCCT GGGGCTGACC TGGGAAGCAC
  R
  CCCCACTCCC GGAGAAGAAC TCACT                                      
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss138725612	ENSMUSSNP3811678	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
ss324170086	CHEV_12_113913343	CHEVERUD	SCREENING_POP	f	SNP			G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49016476					SNP	G	A	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr12:112641566 () rs orientation: forward

Symbol	Name	Function Class
Akt1	thymoma viral proto-oncogene 1	300 bp upstream
Cpgi5173	CpG island 5173	223 bp distal
Gm30150	predicted gene, 30150	within coordinates
Rr369631	regulatory region 369631	298 bp upstream
Rr473553	regulatory region 473553	867 bp distal
Rr473554	regulatory region 473554	711 bp distal
Rr473555	regulatory region 473555	732 bp distal
Rr473556	regulatory region 473556	within coordinates
Rr473557	regulatory region 473557	129 bp distal
Rr473558	regulatory region 473558	315 bp proximal
Rr473559	regulatory region 473559	506 bp proximal
Rr473560	regulatory region 473560	752 bp proximal
Tssr115391	transcription start site region 115391	709 bp downstream
Tssr117877	transcription start site region 117877	1105 bp upstream
Tssr117878	transcription start site region 117878	1046 bp upstream
Tssr117879	transcription start site region 117879	857 bp upstream
Tssr117880	transcription start site region 117880	765 bp upstream
Tssr117881	transcription start site region 117881	747 bp upstream
Tssr117882	transcription start site region 117882	368 bp upstream
Tssr117883	transcription start site region 117883	318 bp upstream
Tssr117884	transcription start site region 117884	295 bp upstream