rs49016886 SNP Detail

Summary

• ID
  rs49016886
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr9:20580956 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATCGAACACA CACTAAAGGG
  AAAAGAAAAG GCAGTGGAGA ATGATAGAGA AAAACATGTT GACCTCTGGC CTCATGCAGG
  GACACACACC TGCCTATGCA CATTCCTTTA TGAACATATA ACAAAAGGAC CCTAAATTAG
  TGGTGATGAC CTGAAGGATC AGGGAACATT TTCCTCTAGG AGACTTACTA GGATCATAGA
  Y
  TCACTGGACA CTAGGTTGAG ACTGTTCACT GAACAGCTAT TGGGTAATAA GAGGTTACTT
  TGATTTCACT ATATTTTGGT TGGTTTGACT TGGTTTTTGT TGTTTTGGTT TTGGTTTTGG
  TTTTTGAGTA GAGTCTAACT ATGTAACCTA GGCTGGCTTG GAACTCATTT TGTAGACCAA
  ACTGGCCTTG AGCTCACACC                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61358367	NES16736066	PERLEGEN	MM_PANEL2	f	SNP	T	T	T	T	T	C	T	T	T	T	T	T	T	T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49016886					SNP	T	T	T	T	T	C	T	T	T	T	T	T	T	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61358367	NES16736066	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr9:20580956 () rs orientation: forward

Symbol	Name	Function Class
Cpgi21396	CpG island 21396	1053 bp distal
Olfm2	olfactomedin 2	within coordinates
Tssr88321	transcription start site region 88321	1741 bp upstream
Tssr88322	transcription start site region 88322	1664 bp upstream
Tssr88323	transcription start site region 88323	1646 bp upstream
Tssr88324	transcription start site region 88324	1564 bp upstream