rs49018427 SNP Detail

Summary

• ID
  rs49018427
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr2:12485304 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CTTAAAGAAA TAGTCCCATA
  TAAATAATGC ACTATTAGTC TAAGTTTTTG AAGTTAGCAA GAATTGCCAT AGCTACAAAT
  CATTTCAAAA CTGACAGCAA TGTTTCATGA ATTTAATGTG TTGATAATTT GGCAAGGAGC
  CTATGAACAA CATAAAACAG AAGAATAAAG CAGGGTTGCT TACTTTCCAA AAATTAGGAT
  W
  AAAATATGTA TATTATGTAT GCTACACATT TTATAGACTT TCTGACTGAC TTCATACACA
  TTAACATTTC TTCAAAATTA TAATTGGGTT CTGTAACATC CATATGCACT TGCCGAATAT
  GAGTATATGC TTGGCCTTCT GTGTTGATGG CACAAGTGGA AGTTTAACGA ATGTGAATTG
  AAAATATTTA TTTTTAATTT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss146299333	ENSMUSSNP2593087	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	A	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs49018427					SNP	A	A	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:12485304 () rs orientation: forward

Symbol	Name	Function Class
Rr551920	regulatory region 551920	438 bp proximal