rs49019012 SNP Detail

Summary

• ID
  rs49019012
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr8:12329115 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              ATGTGCTAAC GAGGCACGTT
  ATTTTTAGCC ATGTCAGCAA AGGGATCCAA TTCCTGCACA GTTGTGCCTC TTGCGTAAGT
  GATTTGTTTT CTAAGGACCT TCATGAGAGC CAGAGAAATT TGCCTTCCCT GGAATGAGGC
  CCTGCTGACC CTGGGCTCGC CTGGGGCAGA GGGTTGGGCA GTGGGGACCC TAGAGATGGC
  Y
  CTCTCTGCAA TAGGGGAGTG CCTATAGGGT GCTGCCTGGG AGAGAGGTTC AGAAGATAAA
  ATTAACATGG CATATGACTG GTTGGAAGTG GGCGTTTTGC AGGAGGGGTG AGGGAGCCTG
  ATAGGGTTCT GGCCCTGACA GAGGAGCTTA TGGGATGAAC ACTGGAAAAT GTACTGCCGC
  TGTGTGCTGA GGAGAAAGGT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
ss60572178	NES16031360	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	C	C		T	C	T	T		C
ss322497669	CHEV_8_12279115	CHEVERUD	SCREENING_POP	f	SNP									C					T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	LG/J	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	SM/J	WSB/EiJ
rs49019012					SNP	C	C	C	C	C	C	C	C	C	T	C	T	T	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60572178	NES16031360	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr8:12329115 () rs orientation: forward

Symbol	Name	Function Class
A230072I06Rik	RIKEN cDNA A230072I06 gene	within coordinates
Rr659697	regulatory region 659697	within coordinates