rs49019116 SNP Detail

Summary

• ID
  rs49019116
• Variation Type
  SNP
• Alleles
  G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:3399509 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        AATGC TGGCAAGAGT GTAAGGAAGT
  G
  AAAAACCACC TCTGCTTCAG TTTCC                                      
  
  G = G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
ss132926225	ENSMUSSNP494229	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	G	G
ss321724844	CHEV_6_3349509	CHEVERUD	SCREENING_POP	f	SNP				G	G
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	LG/J	SM/J
rs49019116					SNP	G	G	G	G	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:3399509 () rs orientation: forward

Symbol	Name	Function Class
Rr134883	regulatory region 134883	92 bp proximal
Rr146113	regulatory region 146113	within coordinates
Rr146114	regulatory region 146114	291 bp proximal
Rr378834	regulatory region 378834	1950 bp downstream
Rr399551	regulatory region 399551	within coordinates
Samd9l	sterile alpha motif domain containing 9-like	51 bp upstream
Tssr59689	transcription start site region 59689	194 bp upstream
Tssr59690	transcription start site region 59690	45 bp upstream
Tssr59691	transcription start site region 59691	36 bp downstream