rs49019757 SNP Detail

Summary

• ID
  rs49019757
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr18:4376717 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTAACCTGTG GATAGTTTTT
  AGAATTCTAG AACAGTCGTG CAAGACTGTA TGTTGAAATG ACTGAATTGG ATTTAGCAGA
  AGCAGCTTCT GTTGAAAATT CATTAAATAA CCCAGTAAAT CCAAATGCGG TTTCTGCCAG
  AGATTCTGTT GTAATTTAGC ATTTGTGTGA TGGCTTAAGT TTGAGAGCAT TTTTATATGC
  Y
  CCTTGGGACA TAAAAGAAAA CCTGTGGAGT AGAACAGAAG GCATTATTGC AACGTTGTTT
  TAATTTCGTT CCTATTTTCT GTGTGCACAT GTGAGTGTTG TGTCTGTGTG TATGGTTGCA
  TATGTGTGGG CACGTGTGTA AGTGCGTGTG GGCATGAGTG TGTGGCTCTT TCAAACTGTT
  CATCGAGGCA GGATCTCAAT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
ss146573627	ENSMUSSNP4530248	ENSEMBL	ENSEMBL_Sanger	f	SNP	C	C	C	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J	DBA/2J	MSM/Ms
rs49019757					SNP	C	C	C	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr18:4376717 () rs orientation: forward

Symbol	Name	Transcript	Protein	Function Class	Allele	Residue	Codon Position	AA Position
Gm26865	predicted gene, 26865			within coordinates
Gm50096	predicted gene, 50096			within coordinates
Mtpap	mitochondrial poly(A) polymerase			Intron
				Noncoding-Transcript-Variant
Rr370335	regulatory region 370335			988 bp downstream
Rr533218	regulatory region 533218			1115 bp distal
Rr533219	regulatory region 533219			925 bp distal
Tssr149909	transcription start site region 149909			1094 bp downstream