rs49019899 SNP Detail

Summary

• ID
  rs49019899
• Variation Type
  SNP
• Alleles
  A

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr6:128651688 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        CCTGAGTTAC TCGATGTTGC CATCCTGAGA GGAAGCTTTA
  TGGTGGAAAC TCAAAGGTCA TGTGAAACTG AGAGACACAT ATATTTCCTT TATCTGTGTT
  A
  TGACAGAATT TTCTGAAGAG ATACAAGGGG ACTTCTGACC ACTGGATTGG CCTGCACAGA
  GCATCAACAC AGCACCCTTG GATATGGACA GACAACACT                       
  
  A = A
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	DBA/2J	LG/J	SM/J
ss133644079	ENSMUSSNP6370708	ENSEMBL	ENSEMBL_Sanger	f	SNP	A
ss321946000	CHEV_6_128624743	CHEVERUD	SCREENING_POP	f	SNP		A	A
SNP Consensus Information
SNP					Consensus Type	DBA/2J	LG/J	SM/J
rs49019899					SNP	A	A	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr6:128651688 () rs orientation: forward

Symbol	Name	Function Class
Clec2h	C-type lectin domain family 2, member h	within coordinates
D6Mit257	DNA segment, Chr 6, Massachusetts Institute of Technology 257	1300 bp distal
Tssr59073	transcription start site region 59073	712 bp downstream
Tssr59074	transcription start site region 59074	25 bp upstream
Tssr59075	transcription start site region 59075	1894 bp upstream