rs49020256 SNP Detail

Summary

• ID
  rs49020256
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr15:100168237 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              TTCCATTATT TCTCGACCCG
  CCTAGGTCGG CCCCAACAAT TTGGCGAACC AACTCGAGAC CTGAGAATGG CAGAAGACAC
  CGGAAGAAAC ACTGCTGGTA TGGAGCTCCA CAGATAGAAA AGAATTAGAA AATTCGTACT
  GGAACGCGGA GAAGCAACGG GCAAAAGGTT GCTAAGGTGT GGTAAGGTCT GAGCTGGAAC
  W
  GCACTGACCC GCGCTGGATC CGCTCAAGTT CAGCAGTGAT ATCAGGATCT AGGAACATTA
  ACAGGCAGTC GGCCACAGCT TTCAGAAGCT ACTTTTTAGG CGAGAGAAAT AAAAGGGTTT
  GGATTAAATA ATCAGGTGGA TTGGCCACAG TTGGAAACTG CATCAGGCGG GAGGATAATG
  GAATTTGAAA TTCTCCCAGA                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129X1/SvJ	A/J
ss148473244	ENSMUSSNP5871691	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	T
SNP Consensus Information
SNP					Consensus Type	129X1/SvJ	A/J
rs49020256					SNP	A	T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr15:100168237 () rs orientation: forward

Symbol	Name	Function Class
Gm56733	predicted gene, 56733	within coordinates
Rr391198	regulatory region 391198	within coordinates
Tssr4717	transcription start site region 4717	253 bp downstream
Tssr133109	transcription start site region 133109	1166 bp downstream
Tssr133110	transcription start site region 133110	1329 bp upstream