rs49020633 SNP Detail

Summary

• ID
  rs49020633
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr5:91054504 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              CATGAGGAGT TTCTCCTAAC
  TTCCAGGGAG AGTTGGTTTA ATTTCCCGAA ATGCAGTGCT TTTCTAATGT CACCAAGTTT
  GAATGCTCTC TGAGCATGTC AGTTTTAATG TAAGCTTCCC AGACAGGCAG GTACACACGG
  AAACTCCAGA GCAGAGGTAA AGATTGACAT GAGGCAGGGA GAGCTACGCT GTGGGAATAC
  Y
  CTCCAGACCT GAGCAGGAAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGAG AGAGAGAGGT
  GACTCAGTGG GACCCGTCCT GGCTGATATG CTGAGGTATA CCATGAAGGT CAGTGGTTGC
  CTGATGGTCT GGTACAACTC CTAATGGCCC CATACTGTTT CAAACACCCG TACTGTTCTT
  TTACCACCCC CTCATTGTTT                                            
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss61198233	NES16702767	PERLEGEN	MM_PANEL2	f	SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49020633					SNP	C	C	C	C	C	C	T	C	C	C	T	C	C	T	C

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss61198233	NES16702767	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr5:91054504 () rs orientation: forward

Symbol	Name	Function Class
Cxcl2	C-X-C motif chemokine ligand 2	707 bp downstream
Tssr47235	transcription start site region 47235	1442 bp downstream
Tssr47236	transcription start site region 47236	1403 bp downstream
Tssr47237	transcription start site region 47237	1383 bp downstream
Tssr47238	transcription start site region 47238	1324 bp downstream
Tssr47239	transcription start site region 47239	1319 bp downstream
Tssr47240	transcription start site region 47240	1300 bp downstream
Tssr47241	transcription start site region 47241	1271 bp downstream
Tssr47242	transcription start site region 47242	1246 bp downstream
Tssr47243	transcription start site region 47243	1228 bp downstream
Tssr47244	transcription start site region 47244	1189 bp downstream
Tssr47245	transcription start site region 47245	1172 bp downstream
Tssr47246	transcription start site region 47246	1118 bp downstream
Tssr47247	transcription start site region 47247	1064 bp downstream
Tssr47248	transcription start site region 47248	1005 bp downstream
Tssr47249	transcription start site region 47249	944 bp downstream
Tssr47250	transcription start site region 47250	806 bp downstream
Tssr47251	transcription start site region 47251	741 bp downstream
Tssr47252	transcription start site region 47252	689 bp downstream
Tssr51814	transcription start site region 51814	1427 bp upstream
Tssr51815	transcription start site region 51815	1381 bp upstream
Tssr51816	transcription start site region 51816	1348 bp upstream