rs49020680 SNP Detail

Summary

• ID
  rs49020680
• Variation Type
  SNP
• Alleles
  G/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr3:124017888 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AATTGTCTTC ACTAGATTGG
  TCTGTCTATT GGGTCTTTTC TTGATTAATG ATTGATGCGG GAGAGTCCAG CCCACTGTTA
  GTTTTACCAC CACTGAAAGC TCCTGAGTTG GGTAAGAAAA CAGGCTGAAC AGTCCAAGGA
  AAGCAAGCTA GTAAACAGTG CTCACCCATG ATCTCTGTTT CAGTAACTGC CTCCTTGTTC
  K
  TACCTTGAGA TCTGGTCTTC TTCTTCTGAT GGACTGTAAT TCATAAGTCA AATACATAAA
  TTCTCATTGC AAACTGCTTT TGGCCAGTGT TTTTTTTTCA CAACAACATA AAGCAAACTA
  AGACAGTGTA TTTTTTATCC TTTTACAAAA TACTGATAAA ATATCTATAA CCTCTGTAAT
  TCTGTTTCTT CAGTATTTTT                                            
  
  K = G/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J	LG/J	SM/J
ss135782529	ENSMUSSNP2890598	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	T
ss320926387	CHEV_3_123927157	CHEVERUD	SCREENING_POP	f	SNP			T	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J	LG/J	SM/J
rs49020680					SNP	G	T	T	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr3:124017888 () rs orientation: forward

Symbol	Name	Function Class
Rr584579	regulatory region 584579	1940 bp proximal