rs49021085 SNP Detail

Summary

• ID
  rs49021085
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:48654686 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              AAGTCCTTCT TAAAAGAGGA
  ACAGAGCCAC AGAAATAGGG AAGCTGAGTT CAAACTTAGG AAAGAGGCAT CAAGTATGGA
  TGACTGAGGA GCGGACAGCA AGGTAGGGTG AAGGAGGGGG CCATCCCAAC CCTCAGGGAA
  CCAGCTTGAG CTCCAAGGAT CCATTAACCT TGCTCTCCCG AGATGAAGAG GGCAAAATAG
  R
  CATCCTGGTC CCATAAGACC AGAGGGAAGA TGTCTTAAAT AGAGCCAGAG GGATTTCAAG
  AACAAGACAC GTCTTAGCCA GCAGGATACT TGACTTGCAA GCATGAGGAT CTGTGATTGG
  ATACACAGGA AGCATGAGAA AAGCCAGTTA CAGTGTCACA TGCCTGTCTC CCAAGAACAG
  AGACACGAGA GGCAGAGACA                                            
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss62767937	NES17350421	PERLEGEN	MM_PANEL2	f	SNP	G	G	G	G	G	A	G	G	G	G	G	G	G	G
SNP Consensus Information
SNP					Consensus Type	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49021085					SNP	G	G	G	G	G	A	G	G	G	G	G	G	G	G

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62767937	NES17350421	PERLEGEN	MM_PANEL	f	SNP	A/G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:48654686 () rs orientation: forward

Symbol	Name	Function Class
Rr335233	regulatory region 335233	1486 bp distal
Rr335234	regulatory region 335234	685 bp distal
Trem2	triggering receptor expressed on myeloid cells 2	within coordinates
Tssr145093	transcription start site region 145093	1241 bp downstream
Tssr145094	transcription start site region 145094	1213 bp downstream
Tssr145095	transcription start site region 145095	1165 bp downstream
Tssr145096	transcription start site region 145096	1132 bp downstream
Tssr145097	transcription start site region 145097	127 bp downstream
Tssr145098	transcription start site region 145098	170 bp upstream
Tssr145099	transcription start site region 145099	822 bp upstream
Tssr145100	transcription start site region 145100	851 bp upstream
Tssr145101	transcription start site region 145101	888 bp upstream
Tssr145102	transcription start site region 145102	987 bp upstream
Tssr148525	transcription start site region 148525	1032 bp downstream