rs49024962 SNP Detail

Summary

• ID
  rs49024962
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr14:57763259 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        TGGGCGGGGT CGGGTGGGGC CTGGGCGGGG CCCGGCTGCC
  ACTGGAGCGG TATAGGTGGA CGGTGCTTGA AGGAAGGGGT CGTGAGGGGG ATCGGGTGGG
  R
  TCGGCTGGAG CGGGAGGGGA GTGGCAAGAC GGTCGGGTGG TGCTATGGAG ATGGTGTAGT
  GCCCGAGGGG CGGGGTCTGA GGAGCGGACG GAGGTGATG                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss139591687	ENSMUSSNP5834557	ENSEMBL	ENSEMBL_Sanger	f	SNP	A	G
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49024962					SNP	A	G

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr14:57763259 () rs orientation: forward

Symbol	Name	Function Class
AU020094	expressed sequence AU020094	967 bp distal
Cpgi6542	CpG island 6542	within coordinates
Il17d	interleukin 17D	within coordinates
Rr404129	regulatory region 404129	12 bp downstream
Rr492824	regulatory region 492824	1310 bp distal
Rr492825	regulatory region 492825	1015 bp distal
Tssr125870	transcription start site region 125870	998 bp downstream
Tssr125871	transcription start site region 125871	697 bp downstream
Tssr128966	transcription start site region 128966	335 bp upstream
Tssr128967	transcription start site region 128967	277 bp upstream
Tssr128968	transcription start site region 128968	157 bp upstream