rs49025984 SNP Detail

Summary

• ID
  rs49025984
• Variation Type
  SNP
• Alleles
  C/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  138
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr1:40503345 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                        CCTGG TTTGCTAAGT CCACCTGCTC
  Y
  GCTGTAGTAG AAGGTTTTGA TCTTC                                      
  
  Y = C/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
ss60721692	NES16361175	PERLEGEN	MM_PANEL2	f	SNP	C		T	T	T	T	T	C	T	C	T	C	C	C	C	T
ss148982296	ENSMUSSNP518366	ENSEMBL	ENSEMBL_Sanger	f	SNP		C	T						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	NZW/LacJ	PWD/PhJ	WSB/EiJ
rs49025984					SNP	C	C	T	T	T	T	T	C	T	C	T	C	C	C	C	T

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss60721692	NES16361175	PERLEGEN	MM_PANEL	f	SNP	C/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr1:40503345 () rs orientation: forward

Symbol	Name	Function Class
Il1rl1	interleukin 1 receptor-like 1	within coordinates
Il18r1	interleukin 18 receptor 1	1367 bp upstream
Rr16188	regulatory region 16188	1256 bp proximal
Rr29358	regulatory region 29358	1455 bp proximal
Rr371160	regulatory region 371160	1068 bp upstream
Tssr6462	transcription start site region 6462	1936 bp downstream
Tssr6463	transcription start site region 6463	1852 bp downstream
Tssr6464	transcription start site region 6464	1827 bp downstream
Tssr6465	transcription start site region 6465	1456 bp upstream
Tssr6466	transcription start site region 6466	1518 bp upstream
Tssr6467	transcription start site region 6467	1780 bp upstream
Tssr6468	transcription start site region 6468	1791 bp upstream
Tssr6469	transcription start site region 6469	1884 bp upstream
Tssr6470	transcription start site region 6470	1903 bp upstream
Tssr6471	transcription start site region 6471	1995 bp upstream