rs49026033 SNP Detail

Summary

• ID
  rs49026033
• Variation Type
  SNP
• Alleles
  A/G

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser | Alliance Variant
  

Genome Location and Flanking Sequence

• Location
  Chr2:127430008 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                        GTGCTCAAGG TCCTGGTCCA GAAAGTTCAT TTTGTTGCAA
  TATTTAACCT GAAATCACTT GATAGGGTAT GTGACTTGAG CCTTCGTTTG TTTTGCCGGC
  R
  TTGAAACCAT CTCATTAAGG CCTCTGTCCA TAGTAAGTTG TAACATTCAC TAGCGCTCGC
  AGGTGATCTA TCTAAAGTGT ACACTTCAAA GGTTTTGTT                       
  
  R = A/G
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	A/J	DBA/2J
ss147535301	ENSMUSSNP3345291	ENSEMBL	ENSEMBL_Sanger	f	SNP	G	A
SNP Consensus Information
SNP					Consensus Type	A/J	DBA/2J
rs49026033					SNP	G	A

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr2:127430008 () rs orientation: forward

Symbol	Name	Function Class
Cpgi12227	CpG island 12227	64 bp distal
Mrps5	mitochondrial ribosomal protein S5	Intron
Rr564563	regulatory region 564563	1005 bp distal
Rr564564	regulatory region 564564	856 bp distal
Rr564565	regulatory region 564565	within coordinates
Rr564566	regulatory region 564566	507 bp distal
Rr564567	regulatory region 564567	239 bp proximal
Rr564568	regulatory region 564568	1986 bp proximal
Tssr20024	transcription start site region 20024	825 bp downstream
Tssr20025	transcription start site region 20025	809 bp downstream
Tssr20026	transcription start site region 20026	658 bp downstream
Zfp661	zinc finger protein 661	994 bp upstream