rs49026419 SNP Detail

Summary

• ID
  rs49026419
• Variation Type
  SNP
• Alleles
  A/T

• Created in dbSNP Build
  127
• Last Updated in dbSNP Build
  137
• Additional Resources
  JBrowse Genome Browser | Ensembl SNPView | UCSC Browser
  

Genome Location and Flanking Sequence

• Location
  Chr17:73293941 (GRCm39)
• SNP Orientation to the Genome
  forward

• SNP Reference Flanking Sequence

                                              GTGTTGATGC CAGGGCCCTG
  CCAGGGTAAA GTGAGCTGCT GGTAGCAGCC TAGAGACAGT GACTGCAAAT TCCCTTCTTC
  ACATATGCTT AGTAGAGAGT TACTTGTCTA AACCTCCATT TCTTTTCTTT TTCCTGCCTT
  TTTAAAAAAT AAATCTGTAT TTCTATAATA TGAGGGAACT GGGCTAGATC AAATCCCAGA
  W
  GCTCTCTCAA GGGCCTTAGG CTCTAACTAC AGCCTCTACT CAGTACTGTC AGCACAGTGT
  GGAAAGGCTG GTGACCTAAT GGTCTTACTA GATGGTGGCA TTGAACTCGT TGGGCAAAAT
  TAGTGTGTAC TCCCGCAGAG TGGATTCTTC CTTTGTCTTA TTGTGTGTGT GTGTGTGTGT
  GTGTGTGTGT GTGTGTGTGT                                            
  
  W = A/T
  

  
  Note: Sequence in lower case indicates low-complexity or repetitive sequence

  ---

SNP Assays
and
SNP Consensus

Strain alleles of submitted assays, and consensus values for this SNP

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
ss62893052	NES17390935	PERLEGEN	MM_PANEL2	f	SNP	A		T	T	T	A	T	T	T	T	T	T	T	T	A
ss145927751	ENSMUSSNP3974365	ENSEMBL	ENSEMBL_Sanger	f	SNP		T	T						T
SNP Consensus Information
SNP					Consensus Type	129S1/SvImJ	129X1/SvJ	A/J	AKR/J	BALB/cByJ	BTBR T<+> Itpr3/J	C3H/HeJ	CAST/EiJ	DBA/2J	FVB/NJ	KK/HlJ	MOLF/EiJ	NOD/ShiLtJ	PWD/PhJ	WSB/EiJ
rs49026419					SNP	A	T	T	T	T	A	T	T	T	T	T	T	T	T	A

Additional submitted assays for this SNP, where the strain of origin for observed alleles is not specified by the submitter

Assay ID	Submitter SNP ID	Submitter Handle	Population	ss orientation	Variation Type	Alleles
ss62893052	NES17390935	PERLEGEN	MM_PANEL	f	SNP	A/T

Gene/Marker
Associations
and
Function
Classes

MGI genes/markers associated with the SNP

Location: Chr17:73293941 () rs orientation: forward

Symbol	Name	Function Class
Gm23649	predicted gene, 23649	852 bp upstream